PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676758258
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 602aa    MW: 64755 Da    PI: 9.3517
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676758258genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-0582104123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C+ C+k F r  nL+ H r H
  676758258  82 FICEVCNKGFQREQNLQLHRRGH 104
                89*******************88 PP

2zf-C2H213.10.00029158180123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k++  +s+ k H +t+
  676758258 158 WKCEKCSKRYAVQSDWKAHSKTC 180
                58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.88E-781104No hitNo description
Gene3DG3DSA:3.30.160.606.8E-681104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9982104IPR007087Zinc finger, C2H2
SMARTSM003550.005282104IPR015880Zinc finger, C2H2-like
PfamPF121713.0E-582104IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM00355110123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-5146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.88E-7153178No hitNo description
SMARTSM00355130158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAASSSSAAS FFGVRQDDQP HLLPPNSSAA APPPPPHHQP PQPQQPLEAP PQKKKRNQPR  60
TPNSDAEVIA LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKSTKEVKR  120
KVYLCPEPTC VHHDPSRALG DLTGIKKHYY RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC  180
GTKEYRCDCG TLFSRRDSFI THRAFCDALA QESARHPTSL TSLPSHHFQY GQNTNNSNNN  240
NTSSMILGLS HMGAPQNLDH QSGDVLRLGS GGGGGGAASR SSSDLIAANA SGYFMQEQNP  300
SFHDQQDHHH HHQHQQQGFL AASSNIKPSP MNFQQSLMQF SHDNHNSTSS NLFNLSFLSG  360
NNGVASATSN PNAAAVSSGN IMISNHFDGE NAVGGGGGEG STGLFPNNLM SSADRISSGT  420
VPSLFSSSMQ NPNSTPHMSA TALLQKAAQM GSTSSSNNNN VSSNNNNNNA SSILRSFGSG  480
MYGENESNLH DLMNSFSNPG ATGNNVNGVD SPFGSYGGVS KGLNADKQSM TRDFLGVGQI  540
VRSMSGSGGF QQQQQQQQQQ HGNSTRERVA SSSDSADRNS INVNPGGGPA SSPPYGIHHA  600
SF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6214950.0AJ621495.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 2 (idz2 gene).
GenBankAY0561740.0AY056174.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
GenBankBT0012150.0BT001215.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123129.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ9ZUL30.0IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLM4FIP50.0M4FIP5_BRARP; Uncharacterized protein
STRINGBra040974.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.10.0indeterminate(ID)-domain 5